The Biochemical Abstract Machine BIOCHAM

EPI Lifeware, INRIA Paris-Rocquencourt, France
http://lifeware.inria.fr/Biocham/

developpers mailing list: biocham@inria.fr

New A new version of Biocham-web has been released. Try it online!

New Biocham 3.6 has been released in October 2014.

Overview

The Biochemical Abstract Machine (Biocham) is a modelling environment for systems biology, with some unique features for static analysis or for inferring unknown model parameters from temporal logic constraints.

Biocham is mainly composed of :

Biocham is a free software protected by the GNU General Public License GPL version 2. This is an Open Source license that allows free usage of this software.

Feedback on the use of Biocham in applications, research or teaching are particularly welcomed.

Documentation

You can also try running some Biocham commands through the online version.

Biocham-web

Try the last version of Biocham online.

Download and Installation

Binary versions:

We recommend that you have already installed first Java version >= 1.5 for using the GUI of BIOCHAM.

Then you just need to execute and follow the instructions of the setup program.

Source version:  Biocham-3.6.tar.bz2.

To install from source (which may be difficult on some platforms), and to be able to use all the features of Biocham, you need to install also:

The installation then basically proceeds by
./configure
make

make install

If a recompilation is needed on your machine, you may need to install also:

The file INSTALL explains the compilation and installation procedure for Windows, Linux and Mac OS X (at least 10.4).

References:

See the bibliography of the user's manual

Feedback and bug reports:

Mail to  biocham@inria.fr